species:   Fugra
pid:       PID0990
parent:    FgmilR-7dps-07
paralog:   
locus:     NC_026474.1:3519343-3519454
matures:   ['UCGCCCUUUGUAGACCAGACCC', 'CCCUCUUCUAUUGGGUGAUC']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:3519343-3519454

1 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

   ************************                                                            **********************   
UCACUUCGCCCUUUGUAGACCAGACCCUCCAUAAUGGACCCUGGAGCAGUGCAGUGCCACAGUAGCUUAGGUAGCGACCCCAGUCCCAACCCUCUUCUAUUGGGUGAUCUGA
(((..((((((...(((((..((....((((...))))..(((..(((......)))..))).......(((.(.(((....))).).)))))..))))).))))))..)))
-----UCGCCCUUUGUAGACCAGACCC------------------------------------------------------------------------------------- l=22 a=3 c
-----------------------------------------------------------------------------------------CCCUCUUCUAUUGGGUGAUC--- l=20 a=0 c*
-----UCGCCCUUUGUAGACCAGACCC------------------------------------------------------------------------------------- l=22 a=3 ma
-----------------------------------------------------------------------------------------CCCUCUUCUAUUGGGUGAUC--- l=20 a=0 ma*

UCACUUCGCCCUUUGUAGACCAGACCC------------------------------------------------------------------------------------- l=27 a=1 
-----UCGCCCUUUGUAGACCAGACCC------------------------------------------------------------------------------------- l=22 a=3 (c,ma)
-----UCGCCCUUUGUAGACCAGACCCUC----------------------------------------------------------------------------------- l=24 a=2 

mb-00011
ax-1001011
ku-01
ss-111111101000
fn-011
